{ "_id": "6a1f2d72b401979e7342655f", "Package": "healthiar", "Title": "Quantifying and Monetizing Health Impacts Attributable to\nExposure", "Version": "0.2.4", "Authors@R": "c(\nperson(given = \"Alberto\", family = \"Castro\", email = \"alberto.castrofernandez@swisstph.ch\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-4665-3299\")),\nperson(given = \"Axel\", family = \"Luyten\", role = c(\"aut\"), comment = c(ORCID = \"0000-0002-7005-5889\")),\nperson(given = \"Arno\", family = \"Pauwels\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0001-7519-8080\")),\nperson(given = \"Liliana\", family = \"Vazquez Fernandez\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0003-3778-9415\")),\nperson(given = \"Gianni\", family = \"Ardielli\", role = c(\"ctb\"), comment = c(ORCID = \"0009-0000-3408-2217\")),\nperson(given = \"Iracy\", family = \"Pimenta\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0003-0032-1536\")),\nperson(given = \"Susanne\", family = \"Breitner\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0002-0956-6911\")),\nperson(given = \"Carl\", family = \"Baravelli\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0001-7772-5315\")),\nperson(given = \"Vanessa\", family = \"Gorasso\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0001-6884-9316\")),\nperson(given = \"Maria\", family = \"Lepnurm\", role = c(\"ctb\"), comment = c(ORCID = \"0009-0009-4372-6227\")),\nperson(given = \"Andreia\", family = \"Novais\", role = c(\"ctb\"), comment = c(ORCID = \"0009-0007-7775-108X\")),\nperson(given = \"Maria Jose\", family = \"Rueda Lopez\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0002-2443-1038\")),\nperson(given = \"Minh Nhat\", family = \"Pham\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0002-5972-1668\")),\nperson(given = \"Ana\", family = \"Barbosa\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0002-9623-9002\")),\nperson(given = \"Joao\", family = \"Vasco Santos\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0003-4696-1002\")),\nperson(given = \"Anette\", family = \"Kocbach Bolling\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0003-4209-7448\"))\n)", "Description": "This R package has been developed with a focus on air\npollution and noise but can be applied to other exposures. The\ninitial development has been funded by the European Union\nproject BEST-COST. Disclaimer: It is work in progress and the\ndevelopers are not liable for any calculation errors or\ninaccuracies resulting from the use of this package. Selection\nof relevant references (in chronological order): WHO (2003)\n, Murray et\nal. (2003) , Miller & Hurley (2003)\n, Steenland & Armstrong (2006)\n, WHO (2011)\n,\nGBD 2019 Risk Factors Collaborators (2020)\n.", "License": "GPL (>= 3)", "URL": "https://swisstph.github.io/healthiar/,\nhttps://github.com/SwissTPH/healthiar,\nhttps://doi.org/10.5281/zenodo.18220360", "BugReports": "https://github.com/SwissTPH/healthiar/issues", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "RdMacros": "Rdpack", "LazyData": "true", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "Config/Needs/website": "rmarkdown", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://swisstph.r-universe.dev", "Date/Publication": "2026-03-16 08:53:03 UTC", "RemoteUrl": "https://github.com/swisstph/healthiar", "RemoteRef": "HEAD", "RemoteSha": "03626339d802817ddb041acd2c55a2e0befe12ad", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-15 09:44:03 UTC", "User": "root" }, "Author": "Alberto Castro [cre, aut] (ORCID:\n),\nAxel Luyten [aut] (ORCID: ),\nArno Pauwels [ctb] (ORCID: ),\nLiliana Vazquez Fernandez [ctb] (ORCID:\n),\nGianni Ardielli [ctb] (ORCID: ),\nIracy Pimenta [ctb] (ORCID: ),\nSusanne Breitner [ctb] (ORCID: ),\nCarl Baravelli [ctb] (ORCID: ),\nVanessa Gorasso [ctb] (ORCID: ),\nMaria Lepnurm [ctb] (ORCID: ),\nAndreia Novais [ctb] (ORCID: ),\nMaria Jose Rueda Lopez [ctb] (ORCID:\n),\nMinh Nhat Pham [ctb] (ORCID: ),\nAna Barbosa [ctb] (ORCID: ),\nJoao Vasco Santos [ctb] (ORCID:\n),\nAnette Kocbach Bolling [ctb] (ORCID:\n)", "Maintainer": "Alberto Castro ", "MD5sum": "a26c2e010a56abf86567d3f16283a702", "_user": "swisstph", "_type": "src", "_file": "healthiar_0.2.4.tar.gz", "_fileid": "99a58d6e357452fa89391bb54394c8d5b9b28110199d6b5324ecdbfe02840244", "_filesize": 2080933, "_sha256": "99a58d6e357452fa89391bb54394c8d5b9b28110199d6b5324ecdbfe02840244", "_created": "2026-05-15T09:44:03.000Z", "_published": "2026-06-02T19:22:26.973Z", "_distro": "noble", "_jobs": [ { "job": 79153423024, "time": 259, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7014405031" }, { "job": 79153423091, "time": 251, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7014401038" }, { "job": 79153423517, "time": 267, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7014398485" }, { "job": 79153422757, "time": 190, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7014375423" }, { "job": 79153422761, "time": 272, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7014327911" }, { "job": 79153422375, "time": 118, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7367626480" }, { "job": 79153423155, "time": 230, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7014394576" }, { "job": 79153423520, "time": 223, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7014392266" }, { "job": 79153423104, "time": 220, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7014391581" } ], "_buildurl": "https://github.com/r-universe/swisstph/actions/runs/25911068678", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/swisstph/healthiar", "_commit": { "id": "03626339d802817ddb041acd2c55a2e0befe12ad", "author": "Gianni ", "committer": "GitHub ", "message": "Merge pull request #1511 from SwissTPH/1436-map-and-check-robustness-of-tests\n\n1436 map and check robustness of tests", "time": 1773651183 }, "_maintainer": { "name": "Alberto Castro", "email": "alberto.castrofernandez@swisstph.ch", "login": "ungatoverde", "linkedin": "in/albertocastro1", "orcid": "0000-0002-4665-3299", "uuid": 23521196 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2.0", "role": "Depends" }, { "package": "dplyr", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "Rdpack", "role": "Imports" }, { "package": "sf", "role": "Suggests" }, { "package": "terra", "role": "Suggests" }, { "package": "exactextractr", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "swisstph", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-20", "n": 8 }, { "week": "2025-21", "n": 16 }, { "week": "2025-22", "n": 17 }, { "week": "2025-23", "n": 9 }, { "week": "2025-24", "n": 5 }, { "week": "2025-25", "n": 8 }, { "week": "2025-26", "n": 15 }, { "week": "2025-27", "n": 9 }, { "week": "2025-28", "n": 9 }, { "week": "2025-29", "n": 11 }, { "week": "2025-30", "n": 9 }, { "week": "2025-31", "n": 3 }, { "week": "2025-32", "n": 18 }, { "week": "2025-33", "n": 9 }, { "week": "2025-34", "n": 11 }, { "week": "2025-35", "n": 6 }, { "week": "2025-36", "n": 9 }, { "week": "2025-37", "n": 14 }, { "week": "2025-38", "n": 62 }, { "week": "2025-39", "n": 5 }, { "week": "2025-40", "n": 18 }, { "week": "2025-41", "n": 11 }, { "week": "2025-44", "n": 8 }, { "week": "2025-45", "n": 9 }, { "week": "2025-46", "n": 14 }, { "week": "2025-47", "n": 2 }, { "week": "2025-48", "n": 5 }, { "week": "2025-51", "n": 4 }, { "week": "2025-52", "n": 2 }, { "week": "2026-02", "n": 6 }, { "week": "2026-03", "n": 8 }, { "week": "2026-04", "n": 8 }, { "week": "2026-05", "n": 5 }, { "week": "2026-06", "n": 8 }, { "week": "2026-08", "n": 16 }, { "week": "2026-09", "n": 2 }, { "week": "2026-10", "n": 1 }, { "week": "2026-11", "n": 7 }, { "week": "2026-12", "n": 1 } ], "_tags": [ { "name": "v.0.2.2", "date": "2026-01-09" }, { "name": "v.0.2.3", "date": "2026-02-19" } ], "_stars": 12, "_contributors": [ { "user": "ungatoverde", "count": 2871, "uuid": 23521196 }, { "user": "luytax", "count": 1320, "uuid": 117082092 }, { "user": "gianniard", "count": 117, "uuid": 173659973 }, { "user": "arnopauwels", "count": 14, "uuid": 105283821 }, { "user": "frederikpriem", "count": 3, "uuid": 33513641 }, { "user": "livf", "count": 1, "uuid": 51472835 } ], "_userbio": { "uuid": 5869420, "type": "organization", "name": "Swiss TPH", "description": "Swiss Tropical and Public Health Institute" }, "_downloads": { "count": 187, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/healthiar" }, "_devurl": "https://github.com/swisstph/healthiar", "_pkgdown": "https://swisstph.github.io/healthiar/", "_searchresults": 13, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/healthiar.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/swisstph/healthiar", "_realowner": "swisstph", "_cranurl": true, "_releases": [ { "version": "0.2.1", "date": "2025-11-11" }, { "version": "0.2.1.1", "date": "2026-01-07" }, { "version": "0.2.2", "date": "2026-01-09" }, { "version": "0.2.3", "date": "2026-02-19" }, { "version": "0.2.4", "date": "2026-03-12" } ], "_exports": [ "attribute_health", "attribute_lifetable", "attribute_mod", "cba", "compare", "daly", "discount", "get_discount_factor", "get_inflation_factor", "get_paf", "get_pif", "get_risk", "monetize", "multiexpose", "prepare_exposure", "prepare_lifetable", "prepare_mdi", "socialize", "standardize", "summarize_uncertainty" ], "_datasets": [ { "name": "exdat_cantons", "title": "PM2.5 exposure and COPD incidence in Switzerland", "object": "exdat_cantons", "class": [ "data.frame" ], "fields": [ "year", "canton", "lung_cancer_incidence", "exposure", "pollutant", "exposure_type", "population", "rr", "rr_l", "rr_u", "increment", "function_shape", "cutoff", "language_main", "canton_long" ], "rows": 26, "table": true, "tojson": true }, { "name": "exdat_lifetable", "title": "Population data per age and sex in Switzerland", "object": "exdat_lifetable", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "age_group", "sex", "midyear_population", "deaths" ], "rows": 200, "table": true, "tojson": true }, { "name": "exdat_noise", "title": "Noise exposure in urban and rural regions in Norway", "object": "exdat_noise", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "region", "exposure", "exposure_metric", "exposure_unit", "exposure_category", "exposure_mean", "exposed", "risk_estimate_type", "erf", "health_outcome", "country", "year" ], "rows": 15, "table": true, "tojson": true }, { "name": "exdat_ozone", "title": "PM2.5 exposure and COPD incidence in Switzerland", "object": "exdat_ozone", "class": [ "data.frame" ], "fields": [ "pollutant", "exposure", "exp_unit", "proportion_population_exposed", "mortality_copd_total_year", "rr_central", "rr_lower", "rr_upper", "rr_increment", "cutoff", "erf_shape", "exposure_type", "rr_source", "country", "year" ], "rows": 22, "table": true, "tojson": true }, { "name": "exdat_pm", "title": "PM2.5 exposure and COPD incidence in Switzerland", "object": "exdat_pm", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "pollutant", "mean_concentration", "incidence", "relative_risk", "relative_risk_lower", "relative_risk_upper", "rr_increment", "erf_shape", "cut_off_value", "total_population", "rr_source", "rr_doi", "analysis_name", "year_of_analysis", "location" ], "rows": 1, "table": true, "tojson": true }, { "name": "exdat_prepare_mdi", "title": "Social indicators of the BEST-COST Multidimensional Deprivation Index (MDI)", "object": "exdat_prepare_mdi", "class": [ "data.frame" ], "fields": [ "id", "geo_name", "geo_level", "country", "edu", "unemployed", "single_parent", "no_heating", "pop_change", "norm_edu", "norm_unemployed", "norm_single_parent", "norm_pop_change", "norm_no_heating", "MDI", "MDI_decile", "MDI_quartile" ], "rows": 581, "table": true, "tojson": true }, { "name": "exdat_pwm_2", "title": "Geospatial outlines and populations of the Brussels-Capital region (Belgium)", "object": "exdat_pwm_2", "class": [ "sf", "data.frame" ], "fields": [ "code", "name", "population", "region", "geom" ], "rows": 19, "table": false, "tojson": true }, { "name": "exdat_socialize", "title": "Municipalities in Belgium ranked by BEST-COST Multidimensional Deprivation Index (MDI)", "object": "exdat_socialize", "class": [ "data.frame" ], "fields": [ "NUTS1", "geo_unit", "age_group", "pm25_mean", "rr", "mortality", "population", "score", "ref_prop_pop" ], "rows": 18074, "table": true, "tojson": true } ], "_help": [ { "page": "attribute_health", "title": "Attribute health impacts to an environmental stressor", "topics": [ "attribute_health" ] }, { "page": "attribute_lifetable", "title": "Attribute premature deaths or YLL to an environmental stressor using a life table approach", "topics": [ "attribute_lifetable" ] }, { "page": "attribute_mod", "title": "Create a scenario 2 by modifying an existing scenario 1 and determine attributable health impacts in it", "topics": [ "attribute_mod" ] }, { "page": "cba", "title": "Cost-benefit analysis", "topics": [ "cba" ] }, { "page": "compare", "title": "Compare the attributable health impacts between two scenarios", "topics": [ "compare" ] }, { "page": "daly", "title": "Attributable disability-adjusted life years", "topics": [ "daly" ] }, { "page": "discount", "title": "Discount health impacts", "topics": [ "discount" ] }, { "page": "get_discount_factor", "title": "Get discount factor", "topics": [ "get_discount_factor" ] }, { "page": "get_inflation_factor", "title": "Get inflation factor", "topics": [ "get_inflation_factor" ] }, { "page": "get_paf", "title": "Get population attributable fraction", "topics": [ "get_paf" ] }, { "page": "get_pif", "title": "Get potential impact fraction (PIF)", "topics": [ "get_pif" ] }, { "page": "get_risk", "title": "Get the relative risk of an exposure level", "topics": [ "get_risk" ] }, { "page": "monetize", "title": "Monetize health impacts", "topics": [ "monetize" ] }, { "page": "multiexpose", "title": "Aggregate health impacts from multiple exposures", "topics": [ "multiexpose" ] }, { "page": "prepare_exposure", "title": "Prepare exposure data", "topics": [ "prepare_exposure" ] }, { "page": "prepare_lifetable", "title": "Convert multi-year life table to single year life table", "topics": [ "prepare_lifetable" ] }, { "page": "prepare_mdi", "title": "Create the BEST-COST Multidimensional Deprivation Index (MDI)", "topics": [ "prepare_mdi" ] }, { "page": "socialize", "title": "Consider socio-economic aspects in the attributable health impacts", "topics": [ "socialize" ] }, { "page": "standardize", "title": "Obtain age-standardized health impacts", "topics": [ "standardize" ] }, { "page": "summarize_uncertainty", "title": "Get Monte Carlo confidence intervals", "topics": [ "summarize_uncertainty" ] } ], "_pkglogo": "https://github.com/swisstph/healthiar/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/swisstph/healthiar/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "dplyr", "generics", "glue", "lifecycle", "magrittr", "pillar", "pkgconfig", "purrr", "R6", "rbibutils", "Rdpack", "rlang", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr" ], "_vignettes": [ { "source": "intro_to_healthiar.Rmd", "filename": "intro_to_healthiar.html", "title": "Vignette: Intro to healthiar", "engine": "knitr::rmarkdown", "headings": [ "About healthiar", "Input & output data", "Input", "Hard coded vs. columns", "Hard coded", "Columns", "Tidy data", "Output", "Structure", "Access", "Function examples", "Relative risk", "Goal", "Methodology", "Population attributable fraction", "Simplified for categorical exposure distribution", "Simplified for single exposure value", "Scaling relative risk", "Function call", "Main results", "Absolute risk", "Results per noise exposure band", "One exposure category", "Multiple geographic units", "using relative risk", "Detailed results", "using absolute risk", "Uncertainty", "Confidence interval", "Monte Carlo simulation", "General concepts", "Distributions used for simulation", "User-defined ERF", "Sub-group analysis", "by age group", "Results by age group", "by sex", "Results by sex", "by other sub-groups", "Results by other sub-group", "by age, sex and other sub-groups", "Results by all sub-groups", "YLL & deaths with life table", "YLL", "Data preparation", "General concept", "Determination of populations in the (first) year of analysis", "Entry population", "Survival probabilities", "Exposed scenario", "Unexposed scenario", "Mid-year population", "Population projection", "Results per year", "Population (baseline scenario)", "Population (unexposed scenario)", "Deaths", "Goal (e.g.)", "YLD", "DALY", "Modification of scenarios", "Comparison of two health scenarios", "Population Impact Fraction (PIF)", "General Integral Form", "Categorical Exposure Form", "Population weighted mean concentration form", "Two correlated exposures", "Standardization", "Preparation of exposure data", "Threshold additional to cut-off", "Economic dimension", "Monetization", "Discount factor", "Deflation factor", "Real valuation growth", "Cost-benefit analysis", "Social aspects", "Health impact attributable to social indicator", "Difference most deprived vs. least deprived", "Difference overall vs. least deprived", "Multiple deprivation index", "Inside pipes", "Pipe |>", "Pipe %>%", "Export and visualize", "Export results", "Visualize results", "Abbreviations", "References" ], "created": "2025-09-10 16:24:18", "modified": "2026-03-12 08:35:31", "commits": 30 } ], "_score": 7.182129214052999, "_indexed": true, "_nocasepkg": "healthiar", "_universes": [ "swisstph", "ungatoverde" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.4", "date": "2026-05-15T09:46:43.000Z", "distro": "noble", "commit": "03626339d802817ddb041acd2c55a2e0befe12ad", "fileid": "1f4e16212854c7e4bfb74ed4f0f670c4fd0e08936b402517b1af2b1033d9ea8e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/swisstph/actions/runs/25911068678" }, { "r": "4.6.0", "os": "linux", "version": "0.2.4", "date": "2026-05-15T09:46:36.000Z", "distro": "noble", "commit": "03626339d802817ddb041acd2c55a2e0befe12ad", "fileid": "d3a0320666fe50021998f4601c107c2c3cefd632f2e418bc5530c42174f9ee8a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/swisstph/actions/runs/25911068678" }, { "r": "4.5.3", "os": "mac", "version": "0.2.4", "date": "2026-05-15T09:46:52.000Z", "commit": "03626339d802817ddb041acd2c55a2e0befe12ad", "fileid": "dd09b89a6594563dc49d29615f6a47308f3f903c941337158dab3d76946f5e52", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/swisstph/actions/runs/25911068678" }, { "r": "4.6.0", "os": "mac", "version": "0.2.4", "date": "2026-05-15T09:45:58.000Z", "commit": "03626339d802817ddb041acd2c55a2e0befe12ad", "fileid": "9bba9cfecd1c5822505669d03bbf6fd44ba674808cd607f44b354abe8fe004ca", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/swisstph/actions/runs/25911068678" }, { "r": "4.7.0", "os": "win", "version": "0.2.4", "date": "2026-05-15T09:45:43.000Z", "commit": "03626339d802817ddb041acd2c55a2e0befe12ad", "fileid": "bc52c611206218aff62cdd50b5610d1db75a11b202bcee24fe10a1b8c6999a1f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/swisstph/actions/runs/25911068678" }, { "r": "4.5.3", "os": "win", "version": "0.2.4", "date": "2026-05-15T09:45:35.000Z", "commit": "03626339d802817ddb041acd2c55a2e0befe12ad", "fileid": "b39810558fdbfcb34b8ea24cdcbb7cedf953106bb68e603a7e3da003e138c498", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/swisstph/actions/runs/25911068678" }, { "r": "4.6.0", "os": "win", "version": "0.2.4", "date": "2026-05-15T09:45:31.000Z", "commit": "03626339d802817ddb041acd2c55a2e0befe12ad", "fileid": "aff46f68e2d64a92305061644cde3ca7c60b12761717c987540813eeaeef336d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/swisstph/actions/runs/25911068678" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.4", "date": "2026-06-02T19:22:05.000Z", "commit": "03626339d802817ddb041acd2c55a2e0befe12ad", "fileid": "96b41477d374b26914c0c5ca90201c70f917c33c5f8063c5c10ffc4763284b44", "status": "success", "buildurl": "https://github.com/r-universe/swisstph/actions/runs/25911068678" } ] }